Section: Day 4 | BioDT School_Open Access | LifeWatch ERIC Training Platform

Section outline

Tomas Martinovic, Senior Researcher, IT4Innovations National Supercomputing Center

Marcella Rydmark, Research Coordinator, Natural History Museum, University of Oslo

Taimur Khan, Data Scientist, UFZ

Desalegn Chala Gelete, Crop wild relatives pDT leader, Natural History Museum, University of Oslo

Jürgen Groenveld, Pollinators pDT leader, UFZ

09:30 – 11:00	1. Introducing LEXIS and LEXIS API
11:00 – 11:30	Coffee Break
11:30 – 13:00	2. GUI development and Building Blocks/reusable parts
13:00 – 14:00	Lunch Break
14:00 – 15:30	3. BioDT pDTs presentation: Use cases, practical tips, and lesson's learned
15:30 – 16:00	Coffee Break
16:00 – 17:30	4. Presenting the Hackathon and the tasks
20:00	Social Dinner

Select activity Session 1 (copy)

Session 1
Select activity LEXIS Platform

LEXIS Platform File
Select activity Session 2 (copy) (copy)

Session 2
Select activity Development of Graphical User Interface for Interaction with Digital Twins

Development of Graphical User Interface for Interaction with Digital Twins File
Select activity Session 3

Session 3
Select activity Invasive Alien Plant Species Digital Twin
Invasive Alien Plant Species Digital Twin File
Checklist of IAS : https://floraveg.eu
IASDT dashboard : https://allantsouza.shinyapps.io/IAS-pDT-BioDT-web-app/
IASDT data server : http://opendap.biodt.eu/ias-pdt/0/outputs/
Jupyter noteebook for working with the server : https://github.com/BioDT/Hackathon25/blob/main/04-pDTs/IASDT/IASDT-outputs.ipynb
IASDT workflows for input data download and model fitting: https://github.com/BioDT/uc-ias-workflows/tree/lumi
Select activity Invasive Alien Plant Species Data Streaming Jupyter Notebook

Invasive Alien Plant Species Data Streaming Jupyter Notebook URL

Jupyter notebook for streaming data from the IASDT OPeNDAP server.
Select activity Crop Wild Relatives DT-GUI

Crop Wild Relatives DT-GUI File